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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11728 and 11729 are separated by 420 nucleotides
11729 and 11730 are separated by 389 nucleotides
11730 and 11731 are separated by 205 nucleotides
11731 and 11732 are separated by 74 nucleotides
mRNA_3360: 11728 - KOG4836 Uncharacterized conserved protein, at 493,196 to 494,520
11728
mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494,941 to 495,602
11729
mRNA_3362: 11730 - BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ..., at 495,992 to 499,759
11730
mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499,965 to 500,841
11731
mRNA_3364: 11732 - K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit, at 500,916 to 502,448
11732
Group
Condition
mRNA
_3360
mRNA
_3361
mRNA
_3362
mRNA
_3363
mRNA
_3364
11728
11729
11730
11731
11732
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
-0.1
N.D.
-3.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.7
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.9
-0.7
N.D.
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.8
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.4
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.6
-0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.9
+0.0
N.D.
+0.8
growth on ypd
YPD
+0.1
-0.3
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.7
-0.3
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.7
+0.3
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.1
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
-0.4
+0.4
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
-0.3
-0.2
+0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.4
+0.1
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.0
N.D.
+1.3
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