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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11739 and 11740 are separated by 881 nucleotides
11740 and 11741 are separated by 242 nucleotides
11741 and 11742 are separated by 665 nucleotides
11742 and 11743 are separated by 537 nucleotides
mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516,330 to 521,387
11739
mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522,269 to 523,428
11740
mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523,671 to 524,664
11741
mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525,330 to 527,850
11742
mRNA_3375: 11743 - Hypothetical Protein, at 528,388 to 528,831
11743
Group
Condition
mRNA
_3371
mRNA
_3372
mRNA
_3373
mRNA
_3374
mRNA
_3375
11739
11740
11741
11742
11743
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.9
-0.9
-1.3
-1.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
-1.7
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
-0.8
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-1.3
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.6
-1.5
-0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-1.0
-0.2
+0.0
auxotrophy
YNB Glucose
-0.3
+0.1
-1.2
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.5
-1.3
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.0
-0.6
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
-0.9
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
-0.2
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
+0.3
-0.8
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.7
+0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
-0.4
+0.1
-0.1
growth on ypd
YPD
-0.1
+0.1
+0.2
-0.5
+0.4
auxotrophy
Dropout Complete
-0.3
+0.4
+0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.1
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.8
+0.2
-0.1
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