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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11742 and 11743 are separated by 537 nucleotides
11743 and 11744 are separated by 65 nucleotides
11744 and 11745 are separated by 134 nucleotides
11745 and 11746 are separated by 526 nucleotides
mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525,330 to 527,850
11742
mRNA_3375: 11743 - Hypothetical Protein, at 528,388 to 528,831
11743
mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528,897 to 531,251
11744
mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531,386 to 533,428
11745
mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533,955 to 535,983
11746
Group
Condition
mRNA
_3374
mRNA
_3375
mRNA
_3376
mRNA
_3377
mRNA
_3378
11742
11743
11744
11745
11746
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-1.5
-0.5
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
+0.0
-0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.0
+0.1
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
-0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
-0.6
+0.0
-0.0
growth on ypd
YPD
-0.5
+0.4
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
-0.0
+0.3
-0.2
auxotrophy
YNB Glucose
-0.1
+0.2
-0.1
+0.3
-0.3
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
-0.1
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.5
+0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.4
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
+0.5
+0.2
+0.2
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