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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11744 and 11745 are separated by 134 nucleotides
11745 and 11746 are separated by 526 nucleotides
11746 and 11747 are separated by 1021 nucleotides
11747 and 11748 are separated by 329 nucleotides
mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528,897 to 531,251
11744
mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531,386 to 533,428
11745
mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533,955 to 535,983
11746
mRNA_3379: 11747 - Hypothetical Protein, at 537,005 to 537,944
11747
mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538,274 to 541,877
11748
Group
Condition
mRNA
_3376
mRNA
_3377
mRNA
_3378
mRNA
_3379
mRNA
_3380
11744
11745
11746
11747
11748
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
+0.2
-0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.0
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
-0.5
+0.1
+0.1
growth on ypd
YPD
-0.0
-0.1
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
+0.1
-0.0
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.0
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
+0.3
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
+0.2
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.4
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.3
+0.4
-0.1
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