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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11746 and 11747 are separated by 1021 nucleotides
11747 and 11748 are separated by 329 nucleotides
11748 and 11749 are separated by 620 nucleotides
11749 and 11750 are separated by 267 nucleotides
mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533,955 to 535,983
11746
mRNA_3379: 11747 - Hypothetical Protein, at 537,005 to 537,944
11747
mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538,274 to 541,877
11748
mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542,498 to 545,831
11749
mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546,099 to 548,480
11750
Group
Condition
mRNA
_3378
mRNA
_3379
mRNA
_3380
mRNA
_3381
mRNA
_3382
11746
11747
11748
11749
11750
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.3
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.0
N.D.
+0.1
growth on ypd
YPD
-0.1
-0.1
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
-0.0
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
-0.3
+0.1
-0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-0.3
N.D.
+0.3
auxotrophy
Dropout Complete
-0.0
+0.1
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
-0.0
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.4
-0.0
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.4
-0.1
N.D.
+0.1
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