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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11749 and 11750 are separated by 267 nucleotides
11750 and 11751 are separated by 264 nucleotides
11751 and 11752 are separated by 1125 nucleotides
11752 and 11753 are separated by 1016 nucleotides
mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542,498 to 545,831
11749
mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546,099 to 548,480
11750
mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548,745 to 549,848
11751
mRNA_3384: 11752 - K00963 UGP2, galU, galF UTP--glucose-1-phosphate uridylyltransferase, at 550,974 to 553,438
11752
mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554,455 to 555,770
11753
Group
Condition
mRNA
_3381
mRNA
_3382
mRNA
_3383
mRNA
_3384
mRNA
_3385
11749
11750
11751
11752
11753
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-4.2
N.D.
-0.7
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-2.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-1.5
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
-2.5
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-1.6
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-1.3
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-1.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
-1.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.8
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.1
N.D.
-0.0
auxotrophy
Dropout Complete
N.D.
+0.4
-0.2
N.D.
+0.2
growth on ypd
YPD
N.D.
+0.2
+0.5
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.1
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+1.1
N.D.
+0.0
auxotrophy
YNB Glucose
N.D.
+0.6
+1.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+1.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+2.8
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+2.8
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+3.4
N.D.
+0.4
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