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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11752 and 11753 are separated by 1016 nucleotides
11753 and 11754 are separated by 348 nucleotides
11754 and 11755 are separated by 105 nucleotides
11755 and 11756 are separated by 650 nucleotides
mRNA_3384: 11752 - K00963 UGP2, galU, galF UTP--glucose-1-phosphate uridylyltransferase, at 550,974 to 553,438
11752
mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554,455 to 555,770
11753
mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556,119 to 557,419
11754
mRNA_3387: 11755 - K01771 plc 1-phosphatidylinositol phosphodiesterase, at 557,525 to 558,870
11755
mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559,521 to 561,050
11756
Group
Condition
mRNA
_3384
mRNA
_3385
mRNA
_3386
mRNA
_3387
mRNA
_3388
11752
11753
11754
11755
11756
growth on ypd
YPD
N.D.
-0.3
N.D.
-0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose
N.D.
+0.4
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
N.D.
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
N.D.
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
+0.1
+0.7
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