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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11754 and 11755 are separated by 105 nucleotides
11755 and 11756 are separated by 650 nucleotides
11756 and 11757 are separated by 782 nucleotides
11757 and 11758 are separated by 226 nucleotides
mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556,119 to 557,419
11754
mRNA_3387: 11755 - K01771 plc 1-phosphatidylinositol phosphodiesterase, at 557,525 to 558,870
11755
mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559,521 to 561,050
11756
mRNA_3389: 11757 - K00521 E1.16.1.7 ferric-chelate reductase, at 561,833 to 564,101
11757
mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564,328 to 568,075
11758
Group
Condition
mRNA
_3386
mRNA
_3387
mRNA
_3388
mRNA
_3389
mRNA
_3390
11754
11755
11756
11757
11758
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.6
-1.7
+0.1
auxotrophy
YNB Glucose
N.D.
-0.0
-0.1
-0.4
+0.1
growth on ypd
YPD
N.D.
-0.3
-0.4
-0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.1
-0.6
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.1
-0.1
+0.0
auxotrophy
Dropout Complete
N.D.
+0.1
-0.3
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.3
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.0
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.4
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.1
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.7
+0.3
+0.0
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