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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11756 and 11757 are separated by 782 nucleotides
11757 and 11758 are separated by 226 nucleotides
11758 and 11759 are separated by 679 nucleotides
11759 and 11760 are separated by 347 nucleotides
mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559,521 to 561,050
11756
mRNA_3389: 11757 - K00521 E1.16.1.7 ferric-chelate reductase, at 561,833 to 564,101
11757
mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564,328 to 568,075
11758
mRNA_3391: 11759 - Hypothetical Protein, at 568,755 to 569,736
11759
mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570,084 to 570,935
11760
Group
Condition
mRNA
_3388
mRNA
_3389
mRNA
_3390
mRNA
_3391
mRNA
_3392
11756
11757
11758
11759
11760
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-1.7
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.1
-0.2
-0.5
growth on ypd
YPD
-0.4
-0.2
+0.5
+0.6
-0.9
auxotrophy
Dropout Complete
-0.3
-0.2
+0.1
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.6
+0.2
+0.2
+0.3
auxotrophy
YNB Glucose
-0.1
-0.4
+0.1
+0.1
+0.9
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
-0.3
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
-0.1
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.1
+0.1
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
+0.0
+0.4
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.0
+0.1
+0.3
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
-0.2
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.0
+0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.1
+0.3
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.1
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
-0.1
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.2
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.3
+0.0
+0.2
+0.9
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