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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11759 and 11760 are separated by 347 nucleotides
11760 and 11761 are separated by 434 nucleotides
11761 and 11762 are separated by 106 nucleotides
11762 and 11763 are separated by 157 nucleotides
mRNA_3391: 11759 - Hypothetical Protein, at 568,755 to 569,736
11759
mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570,084 to 570,935
11760
mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571,370 to 574,049
11761
mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574,156 to 575,292
11762
mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006
11763
Group
Condition
mRNA
_3391
mRNA
_3392
mRNA
_3393
mRNA
_3394
mRNA
_3395
11759
11760
11761
11762
11763
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.0
-0.9
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.5
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
-0.8
-0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.4
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.7
-0.1
N.D.
growth on ypd
YPD
+0.6
-0.9
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.5
-0.6
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.5
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.6
-0.5
-0.5
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.3
-0.5
+0.1
N.D.
auxotrophy
YNB Glucose
+0.1
+0.9
-0.7
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.8
-0.6
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.5
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.3
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.9
-0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.7
-0.1
+0.7
N.D.
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