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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11761 and 11762 are separated by 106 nucleotides
11762 and 11763 are separated by 157 nucleotides
11763 and 11764 are separated by 562 nucleotides
11764 and 11765 are separated by 325 nucleotides
mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571,370 to 574,049
11761
mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574,156 to 575,292
11762
mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006
11763
mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577,569 to 578,953
11764
mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579,279 to 580,457
11765
Group
Condition
mRNA
_3393
mRNA
_3394
mRNA
_3395
mRNA
_3396
mRNA
_3397
11761
11762
11763
11764
11765
growth on ricinoleic acid
YNB Glucose
-0.6
-0.2
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose
-0.7
+0.0
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.1
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.3
N.D.
+0.4
+0.1
auxotrophy
Dropout Complete
-0.4
-0.2
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.1
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.1
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
+0.0
-0.2
growth on oleic acid
YNB Glucose
-0.5
+0.1
N.D.
+0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.2
N.D.
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.5
N.D.
+0.5
+0.5
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
N.D.
+0.1
-0.0
growth on ypd
YPD
-0.2
+0.1
N.D.
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.5
N.D.
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.7
N.D.
-0.0
+0.3
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