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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11762 and 11763 are separated by 157 nucleotides
11763 and 11764 are separated by 562 nucleotides
11764 and 11765 are separated by 325 nucleotides
11765 and 11766 are separated by 396 nucleotides
mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574,156 to 575,292
11762
mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006
11763
mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577,569 to 578,953
11764
mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579,279 to 580,457
11765
mRNA_3398: 11766 - Hypothetical Protein, at 580,854 to 581,831
11766
Group
Condition
mRNA
_3394
mRNA
_3395
mRNA
_3396
mRNA
_3397
mRNA
_3398
11762
11763
11764
11765
11766
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.2
+0.4
-0.8
auxotrophy
YNB Glucose
+0.0
N.D.
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
N.D.
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.0
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.3
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.2
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
+0.5
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.1
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.3
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
+0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.3
+0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.4
+0.1
+0.7
growth on ypd
YPD
+0.1
N.D.
+0.2
+0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
+0.5
-0.1
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
-0.0
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
+0.1
+0.3
+0.8
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