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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11763 and 11764 are separated by 562 nucleotides
11764 and 11765 are separated by 325 nucleotides
11765 and 11766 are separated by 396 nucleotides
11766 and 11767 are separated by 459 nucleotides
mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006
11763
mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577,569 to 578,953
11764
mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579,279 to 580,457
11765
mRNA_3398: 11766 - Hypothetical Protein, at 580,854 to 581,831
11766
mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582,291 to 585,718
11767
Group
Condition
mRNA
_3395
mRNA
_3396
mRNA
_3397
mRNA
_3398
mRNA
_3399
11763
11764
11765
11766
11767
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.4
-0.8
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
-0.0
+0.0
auxotrophy
YNB Glucose
N.D.
-0.0
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.4
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.1
+0.3
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.0
+0.3
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.0
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.0
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.3
+0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
+0.5
-0.0
+0.1
growth on ypd
YPD
N.D.
+0.2
+0.4
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.3
+0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.1
+0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.1
+1.1
+0.0
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