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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11771 and 11772 are separated by 694 nucleotides
11772 and 11773 are separated by 88 nucleotides
11773 and 11774 are separated by 632 nucleotides
11774 and 11775 are separated by 224 nucleotides
mRNA_3403: 11771 - BLAST Myc-type, basic helix-loop-helix (bHLH) domain [Xanth..., at 4,224 to 7,427
11771
mRNA_3404: 11772 - K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1, at 8,122 to 9,979
11772
mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10,068 to 11,831
11773
mRNA_3406: 11774 - Hypothetical Protein, at 12,464 to 13,384
11774
mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13,609 to 17,494
11775
Group
Condition
mRNA
_3403
mRNA
_3404
mRNA
_3405
mRNA
_3406
mRNA
_3407
11771
11772
11773
11774
11775
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.9
-0.0
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.7
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.7
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.2
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.2
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.7
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.0
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.5
+0.1
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.2
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
-0.1
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
+0.9
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.6
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.5
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
+0.1
+0.5
growth on ypd
YPD
N.D.
N.D.
+1.1
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+1.0
+0.0
+0.0
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