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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11773 and 11774 are separated by 632 nucleotides
11774 and 11775 are separated by 224 nucleotides
11775 and 11776 are separated by 705 nucleotides
11776 and 11777 are separated by 339 nucleotides
mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10,068 to 11,831
11773
mRNA_3406: 11774 - Hypothetical Protein, at 12,464 to 13,384
11774
mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13,609 to 17,494
11775
mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18,200 to 20,454
11776
mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20,794 to 26,649
11777
Group
Condition
mRNA
_3405
mRNA
_3406
mRNA
_3407
mRNA
_3408
mRNA
_3409
11773
11774
11775
11776
11777
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.9
-0.0
-0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.1
-0.5
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
-0.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
-0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-0.6
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.0
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
-1.0
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.7
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
-0.4
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.6
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.9
N.D.
-0.0
auxotrophy
Dropout Complete
+0.5
-0.1
-0.4
N.D.
-0.0
auxotrophy
YNB Glucose
+0.9
-0.2
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
-0.2
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.5
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.1
-0.4
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.0
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
N.D.
+0.2
growth on ypd
YPD
+1.1
-0.0
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+1.0
+0.0
+0.0
N.D.
+0.2
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