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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11775 and 11776 are separated by 705 nucleotides
11776 and 11777 are separated by 339 nucleotides
11777 and 11778 are separated by 540 nucleotides
11778 and 11779 are separated by 1726 nucleotides
mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13,609 to 17,494
11775
mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18,200 to 20,454
11776
mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20,794 to 26,649
11777
mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27,190 to 28,187
11778
mRNA_3411: 11779 - SUPERFAMILY--SSF81296, at 29,914 to 31,700
11779
Group
Condition
mRNA
_3407
mRNA
_3408
mRNA
_3409
mRNA
_3410
mRNA
_3411
11775
11776
11777
11778
11779
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.0
-0.5
-1.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.4
-0.4
-1.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
-0.1
-0.9
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.0
-0.2
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
N.D.
+0.2
+0.1
-0.4
growth on oleic acid
YNB Glucose
-0.6
N.D.
+0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.7
N.D.
+0.1
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
+0.0
-0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
+0.0
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.1
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.7
N.D.
+0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.0
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
+0.5
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.9
N.D.
-0.0
+0.9
+0.0
growth on ypd
YPD
-0.0
N.D.
+0.2
+0.3
-0.4
auxotrophy
YNB Glucose
-0.5
N.D.
-0.1
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
+0.1
+0.5
-0.0
auxotrophy
Dropout Complete
-0.4
N.D.
-0.0
+0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.2
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.2
+0.4
+0.3
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