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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11777 and 11778 are separated by 540 nucleotides
11778 and 11779 are separated by 1726 nucleotides
11779 and 11780 are separated by 547 nucleotides
11780 and 11781 are separated by 341 nucleotides
mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20,794 to 26,649
11777
mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27,190 to 28,187
11778
mRNA_3411: 11779 - SUPERFAMILY--SSF81296, at 29,914 to 31,700
11779
mRNA_3412: 11780 - KOG0548 Molecular co-chaperone STI1, at 32,248 to 34,426
11780
mRNA_3413: 11781 - K00622 nat arylamine N-acetyltransferase, at 34,768 to 35,867
11781
Group
Condition
mRNA
_3409
mRNA
_3410
mRNA
_3411
mRNA
_3412
mRNA
_3413
11777
11778
11779
11780
11781
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-1.8
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.9
-0.4
N.D.
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.5
-1.4
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-1.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.6
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.2
N.D.
+0.1
growth on ypd
YPD
+0.2
+0.3
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
-0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-0.4
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
+0.0
N.D.
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
-0.6
N.D.
+0.5
auxotrophy
Dropout Complete
-0.0
+0.7
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
+0.6
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.9
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
-0.0
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.1
N.D.
+0.4
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