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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11778 and 11779 are separated by 1726 nucleotides
11779 and 11780 are separated by 547 nucleotides
11780 and 11781 are separated by 341 nucleotides
11781 and 11782 are separated by 490 nucleotides
mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27,190 to 28,187
11778
mRNA_3411: 11779 - SUPERFAMILY--SSF81296, at 29,914 to 31,700
11779
mRNA_3412: 11780 - KOG0548 Molecular co-chaperone STI1, at 32,248 to 34,426
11780
mRNA_3413: 11781 - K00622 nat arylamine N-acetyltransferase, at 34,768 to 35,867
11781
mRNA_3414: 11782 - Hypothetical Protein, at 36,358 to 36,969
11782
Group
Condition
mRNA
_3410
mRNA
_3411
mRNA
_3412
mRNA
_3413
mRNA
_3414
11778
11779
11780
11781
11782
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
-0.4
N.D.
-0.6
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.8
N.D.
+0.3
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
N.D.
+0.1
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-1.4
N.D.
+0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.1
N.D.
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
N.D.
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.1
N.D.
-0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.3
N.D.
-0.2
-0.6
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
N.D.
+0.4
-0.8
growth on ypd
YPD
+0.3
-0.4
N.D.
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
N.D.
+0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
N.D.
+0.4
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
N.D.
+0.8
-0.3
auxotrophy
Dropout Complete
+0.7
+0.1
N.D.
-0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.0
N.D.
+0.3
-0.4
auxotrophy
YNB Glucose
+0.6
+0.1
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.0
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+0.0
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.6
N.D.
+0.5
+0.5
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