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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11779 and 11780 are separated by 547 nucleotides
11780 and 11781 are separated by 341 nucleotides
11781 and 11782 are separated by 490 nucleotides
11782 and 11783 are separated by 1690 nucleotides
mRNA_3411: 11779 - SUPERFAMILY--SSF81296, at 29,914 to 31,700
11779
mRNA_3412: 11780 - KOG0548 Molecular co-chaperone STI1, at 32,248 to 34,426
11780
mRNA_3413: 11781 - K00622 nat arylamine N-acetyltransferase, at 34,768 to 35,867
11781
mRNA_3414: 11782 - Hypothetical Protein, at 36,358 to 36,969
11782
mRNA_3415: 11783 - Hypothetical Protein, at 38,660 to 40,672
11783
Group
Condition
mRNA
_3411
mRNA
_3412
mRNA
_3413
mRNA
_3414
mRNA
_3415
11779
11780
11781
11782
11783
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.6
-0.9
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
N.D.
+0.3
-0.8
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-1.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
N.D.
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
N.D.
+0.1
+0.5
-0.2
auxotrophy
Dropout Complete
+0.1
N.D.
-0.2
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.1
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.4
-0.8
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.4
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.2
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
+0.5
-0.6
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.6
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.3
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
+0.5
-0.5
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.6
-0.3
+0.1
growth on ypd
YPD
-0.4
N.D.
-0.2
+0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.0
+0.7
-0.5
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.8
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.5
+0.5
+0.4
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