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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11783 and 11784 are separated by 1723 nucleotides
11784 and 11785 are separated by 233 nucleotides
11785 and 11786 are separated by 470 nucleotides
11786 and 11787 are separated by 1100 nucleotides
mRNA_3415: 11783 - Hypothetical Protein, at 38,660 to 40,672
11783
mRNA_3416: 11784 - Hypothetical Protein, at 42,396 to 43,510
11784
mRNA_3417: 11785 - Hypothetical Protein, at 43,744 to 46,912
11785
mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47,383 to 48,909
11786
mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314
11787
Group
Condition
mRNA
_3415
mRNA
_3416
mRNA
_3417
mRNA
_3418
mRNA
_3419
11783
11784
11785
11786
11787
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.6
+0.1
-1.4
-1.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
-0.6
-1.3
growth on ypd
YPD
+0.4
-0.5
-0.2
-0.9
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.0
+0.3
-2.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
-1.8
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.3
-1.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
+0.1
-0.1
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
+0.1
-0.1
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.3
-0.2
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.1
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.7
+0.0
-0.9
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.1
+0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.1
-0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.2
-0.1
-0.3
-0.6
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.0
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.5
-0.0
+0.0
-0.3
auxotrophy
Dropout Complete
-0.1
+0.3
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
-0.1
-0.3
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.0
+0.7
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
+0.5
-0.0
auxotrophy
YNB Glucose
+0.0
+0.1
+0.2
+0.5
-0.2
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