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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11784 and 11785 are separated by 233 nucleotides
11785 and 11786 are separated by 470 nucleotides
11786 and 11787 are separated by 1100 nucleotides
11787 and 11788 are separated by 390 nucleotides
mRNA_3416: 11784 - Hypothetical Protein, at 42,396 to 43,510
11784
mRNA_3417: 11785 - Hypothetical Protein, at 43,744 to 46,912
11785
mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47,383 to 48,909
11786
mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314
11787
mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912
11788
Group
Condition
mRNA
_3416
mRNA
_3417
mRNA
_3418
mRNA
_3419
mRNA
_3420
11784
11785
11786
11787
11788
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
-1.4
-1.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.6
-1.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
+0.3
-2.2
-0.4
growth on ypd
YPD
-0.5
-0.2
-0.9
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.1
-1.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-1.8
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.3
-1.5
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-0.3
-0.6
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
-0.1
-0.9
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.3
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.1
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.0
-0.4
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.0
-0.9
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.4
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.0
+0.0
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.3
+0.4
-0.1
auxotrophy
Dropout Complete
+0.3
+0.0
-0.2
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.7
-0.7
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.5
-0.0
+0.3
auxotrophy
YNB Glucose
+0.1
+0.2
+0.5
-0.2
+0.1
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