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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11787 and 11788 are separated by 390 nucleotides
11788 and 11789 are separated by 443 nucleotides
11789 and 11790 are separated by 119 nucleotides
11790 and 11791 are separated by 450 nucleotides
mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314
11787
mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912
11788
mRNA_3421: 11789 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 58,356 to 61,690
11789
mRNA_3422: 11790 - KOG2882 p-Nitrophenyl phosphatase, at 61,810 to 63,146
11790
mRNA_3423: 11791 - KOG3655 Drebrins and related actin binding proteins, at 63,597 to 64,502
11791
Group
Condition
mRNA
_3419
mRNA
_3420
mRNA
_3421
mRNA
_3422
mRNA
_3423
11787
11788
11789
11790
11791
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
-0.3
N.D.
-0.4
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
-0.4
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.3
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.3
N.D.
-0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
N.D.
+0.1
-0.9
growth on oleic acid
YNB Oleic Acid
-0.7
+0.4
N.D.
-1.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.7
-0.3
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.3
N.D.
-0.2
-0.5
auxotrophy
YNB Glucose
-0.2
+0.1
N.D.
-0.5
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.3
+0.1
N.D.
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.4
N.D.
-0.4
-0.4
auxotrophy
Dropout Complete
-0.2
+0.5
N.D.
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.0
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.0
N.D.
-0.0
-0.4
growth on ypd
YPD
-0.3
+0.0
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.0
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
+0.1
+0.5
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