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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11798 and 11799 are separated by 266 nucleotides
11799 and 11800 are separated by 1217 nucleotides
11800 and 11801 are separated by 871 nucleotides
11801 and 11802 are separated by 288 nucleotides
mRNA_3430: 11798 - Hypothetical Protein, at 81,829 to 82,404
11798
mRNA_3431: 11799 - K11155 DGAT1 diacylglycerol O-acyltransferase 1, at 82,671 to 85,458
11799
mRNA_3432: 11800 - BLAST RecF/RecN/SMC protein [Sistotremastrum niveocremeum H..., at 86,676 to 87,359
11800
mRNA_3433: 11801 - HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479, at 88,231 to 90,113
11801
mRNA_3434: 11802 - K00237 SDHD, SDH4 succinate dehydrogenase (ubiquinone) membrane anchor subunit, at 90,402 to 91,512
11802
Group
Condition
mRNA
_3430
mRNA
_3431
mRNA
_3432
mRNA
_3433
mRNA
_3434
11798
11799
11800
11801
11802
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.1
-0.0
N.D.
growth on ypd
YPD
-0.6
+0.3
-0.1
+0.0
N.D.
auxotrophy
Dropout Complete
-0.1
+0.4
-0.4
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.2
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.3
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
+0.0
+0.4
-0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.4
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.3
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
+0.1
+0.3
N.D.
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