Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11802 and 11803 are separated by 473 nucleotides11803 and 11804 are separated by 389 nucleotides11804 and 11805 are separated by 147 nucleotides11805 and 11806 are separated by 146 nucleotides mRNA_3434: 11802 - K00237 SDHD, SDH4 succinate dehydrogenase (ubiquinone) membrane anchor subunit, at 90,402 to 91,512 11802 mRNA_3435: 11803 - K12614 DDX6, RCK, DHH1 ATP-dependent RNA helicase DDX6/DHH1, at 91,986 to 94,017 11803 mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94,407 to 97,285 11804 mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630 11805 mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344 11806
Group Condition mRNA_3434 mRNA_3435 mRNA_3436 mRNA_3437 mRNA_3438
11802 11803 11804 11805 11806
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.9 -0.3 +0.4 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.8 -0.0 +0.2 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.8 -0.3 +0.6 +0.0
growth on ricinoleic acid YNB Glucose N.D. -0.5 -0.2 +0.4 -0.1
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.3 -0.2 +0.3 -0.7
growth on ypd YPD N.D. -0.5 -0.1 +0.3 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.4 -0.3 +0.3 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.5 +0.0 +0.3 -0.1
auxotrophy YNB Glucose 75mM Methionine N.D. -0.4 +0.0 +0.6 -0.4
growth on oleic acid YNB Glucose N.D. -0.5 -0.1 +0.5 -0.1
auxotrophy YNB Glucose N.D. -0.4 -0.1 +0.6 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.2 -0.3 +0.6 -0.2
auxotrophy Dropout Complete N.D. -0.3 -0.1 +0.7 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.3 +0.0 +0.3 -0.0
ypd buoyancy 40 hrs High Buoyancy N.D. -0.1 -0.0 +0.0 +0.1
auxotrophy YNB Glucose 75mM Arginine N.D. -0.4 -0.0 +0.6 -0.1
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.2 +0.0 +0.0 +0.1
growth on oleic acid YNB Oleic Acid N.D. -0.2 -0.1 +0.7 +0.1
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.2 +0.1 +0.5 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.0 +0.3 -0.3 +0.7
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.0 +0.3 +0.5 +0.1
remove
mRNA_3434
plot
remove
mRNA_3435
plot
remove
mRNA_3436
remove
mRNA_3437
plot
remove
mRNA_3438
plot