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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11803 and 11804 are separated by 389 nucleotides
11804 and 11805 are separated by 147 nucleotides
11805 and 11806 are separated by 146 nucleotides
11806 and 11807 are separated by 698 nucleotides
mRNA_3435: 11803 - K12614 DDX6, RCK, DHH1 ATP-dependent RNA helicase DDX6/DHH1, at 91,986 to 94,017
11803
mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94,407 to 97,285
11804
mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630
11805
mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344
11806
mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104,043 to 108,423
11807
Group
Condition
mRNA
_3435
mRNA
_3436
mRNA
_3437
mRNA
_3438
mRNA
_3439
11803
11804
11805
11806
11807
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.3
+0.6
+0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.3
+0.3
+0.2
-0.6
growth on ypd
YPD
-0.5
-0.1
+0.3
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.0
+0.3
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.0
+0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.0
+0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-0.3
+0.4
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.0
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
+0.6
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.0
+0.6
-0.1
+0.3
auxotrophy
YNB Glucose
-0.4
-0.1
+0.6
-0.1
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
+0.3
-0.7
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.5
-0.1
+0.5
-0.1
+0.8
auxotrophy
Dropout Complete
-0.3
-0.1
+0.7
-0.3
+0.8
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
+0.4
-0.1
+1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
+0.5
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.3
+0.7
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.7
+0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.5
+0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.6
-0.2
+1.1
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