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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11805 and 11806 are separated by 146 nucleotides
11806 and 11807 are separated by 698 nucleotides
11807 and 11808 are separated by 1578 nucleotides
11808 and 11809 are separated by 209 nucleotides
mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630
11805
mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344
11806
mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104,043 to 108,423
11807
mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110,002 to 112,287
11808
mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112,497 to 113,807
11809
Group
Condition
mRNA
_3437
mRNA
_3438
mRNA
_3439
mRNA
_3440
mRNA
_3441
11805
11806
11807
11808
11809
growth on ypd
YPD
+0.3
-0.1
-0.4
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.0
-0.6
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-0.2
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.6
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.1
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.3
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.7
+0.3
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.3
+0.2
+0.0
growth on oleic acid
YNB Glucose
+0.5
-0.1
+0.8
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.4
+0.5
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.1
+0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.2
+0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.7
+1.0
+0.0
+0.4
growth on oleic acid
YNB Oleic Acid
+0.7
+0.1
+0.5
+0.1
-0.1
auxotrophy
Dropout Complete
+0.7
-0.3
+0.8
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.2
+0.5
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
+0.4
+0.1
+0.2
auxotrophy
YNB Glucose
+0.6
-0.1
+0.7
+0.0
+0.5
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
+1.2
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
+1.1
-0.0
+0.3
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