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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11806 and 11807 are separated by 698 nucleotides
11807 and 11808 are separated by 1578 nucleotides
11808 and 11809 are separated by 209 nucleotides
11809 and 11810 are separated by 123 nucleotides
mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344
11806
mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104,043 to 108,423
11807
mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110,002 to 112,287
11808
mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112,497 to 113,807
11809
mRNA_3442: 11810 - SUPERFAMILY--SSF52047, at 113,931 to 115,281
11810
Group
Condition
mRNA
_3438
mRNA
_3439
mRNA
_3440
mRNA
_3441
mRNA
_3442
11806
11807
11808
11809
11810
growth on ypd
YPD
-0.1
-0.4
-0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.6
-0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.0
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.0
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.6
+0.2
+0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
+0.5
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.4
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
-0.2
+0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.8
-0.3
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.4
+0.0
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
-0.0
+0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.5
+0.2
+0.1
-0.2
auxotrophy
Dropout Complete
-0.3
+0.8
-0.0
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.4
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.2
+0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+1.1
-0.0
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+1.0
+0.0
+0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+1.2
+0.1
+0.0
-0.0
auxotrophy
YNB Glucose
-0.1
+0.7
+0.0
+0.5
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.3
+0.2
-0.3
+0.4
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