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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11808 and 11809 are separated by 209 nucleotides
11809 and 11810 are separated by 123 nucleotides
11810 and 11811 are separated by 1166 nucleotides
11811 and 11812 are separated by 222 nucleotides
mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110,002 to 112,287
11808
mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112,497 to 113,807
11809
mRNA_3442: 11810 - SUPERFAMILY--SSF52047, at 113,931 to 115,281
11810
mRNA_3443: 11811 - K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10, at 116,448 to 118,253
11811
mRNA_3444: 11812 - Hypothetical Protein, at 118,476 to 119,519
11812
Group
Condition
mRNA
_3440
mRNA
_3441
mRNA
_3442
mRNA
_3443
mRNA
_3444
11808
11809
11810
11811
11812
growth on ypd
YPD
-0.3
-0.2
-0.1
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.4
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.0
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
+0.0
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
+0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
-0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
+0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.3
-0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.0
-0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
+0.3
-0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.2
+0.0
+0.3
auxotrophy
Dropout Complete
-0.0
+0.3
+0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
-0.2
+0.7
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.5
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.4
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.4
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
+0.5
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
+0.5
+0.3
auxotrophy
YNB Glucose
+0.0
+0.5
+0.3
+0.4
-0.0
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