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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11810 and 11811 are separated by 1166 nucleotides
11811 and 11812 are separated by 222 nucleotides
11812 and 11813 are separated by 843 nucleotides
11813 and 11814 are separated by 653 nucleotides
mRNA_3442: 11810 - SUPERFAMILY--SSF52047, at 113,931 to 115,281
11810
mRNA_3443: 11811 - K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10, at 116,448 to 118,253
11811
mRNA_3444: 11812 - Hypothetical Protein, at 118,476 to 119,519
11812
mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120,363 to 121,884
11813
mRNA_3446: 11814 - K07393 ECM4 putative glutathione S-transferase, at 122,538 to 123,846
11814
Group
Condition
mRNA
_3442
mRNA
_3443
mRNA
_3444
mRNA
_3445
mRNA
_3446
11810
11811
11812
11813
11814
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
-0.8
+0.2
growth on ypd
YPD
-0.1
-0.3
-0.2
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
+0.3
-0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
-0.2
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.4
+0.2
-0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.2
-0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.5
+0.3
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.3
-0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
+0.4
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.2
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.4
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.7
-0.3
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.0
+0.3
+0.3
growth on oleic acid
YNB Glucose
+0.4
+0.0
-0.1
+0.6
-0.1
auxotrophy
Dropout Complete
+0.2
+0.3
+0.0
+0.7
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.5
+0.7
+0.1
auxotrophy
YNB Glucose
+0.3
+0.4
-0.0
+0.8
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.1
+0.8
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.3
+0.0
+0.6
+0.6
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