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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11815 and 11816 are separated by 258 nucleotides
11816 and 11817 are separated by 82 nucleotides
11817 and 11818 are separated by 762 nucleotides
11818 and 11819 are separated by 622 nucleotides
mRNA_3447: 11815 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 124,224 to 125,009
11815
mRNA_3448: 11816 - HMMPfam-Peptidase M50B-like-PF13398, at 125,268 to 126,548
11816
mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126,631 to 128,651
11817
mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360
11818
mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040
11819
Group
Condition
mRNA
_3447
mRNA
_3448
mRNA
_3449
mRNA
_3450
mRNA
_3451
11815
11816
11817
11818
11819
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.6
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.2
+0.1
auxotrophy
Dropout Complete
N.D.
-0.0
N.D.
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
N.D.
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
+0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
N.D.
+0.1
+0.1
growth on ypd
YPD
N.D.
+0.3
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+0.3
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
N.D.
+0.2
+0.1
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