Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11818 and 11819 are separated by 622 nucleotides11819 and 11820 are separated by 85 nucleotides11820 and 11821 are separated by 313 nucleotides11821 and 11822 are separated by 96 nucleotides mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132,983 to 136,040 11819 mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934 11822
Group Condition mRNA_3450 mRNA_3451 mRNA_3452 mRNA_3453 mRNA_3454
11818 11819 11820 11821 11822
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.2 N.D. -0.9 -0.2
auxotrophy YNB Glucose -0.4 -0.4 N.D. -0.1 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.2 N.D. -0.7 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 +0.4 N.D. -1.1 +0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.0 N.D. -1.0 +0.5
auxotrophy Dropout Complete +0.1 -0.5 N.D. -0.3 -0.2
growth on ypd YPD +0.2 +0.2 N.D. -1.4 +0.2
growth on ricinoleic acid YNB Glucose +0.1 -0.3 N.D. -0.5 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.3 N.D. -0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.0 N.D. -0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.2 N.D. -0.1 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.1 N.D. -0.1 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 +0.4 N.D. -0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1 N.D. +0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 N.D. +0.0 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.1 N.D. -0.2 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.1 N.D. +0.2 +0.2
growth on oleic acid YNB Oleic Acid +0.2 +0.1 N.D. +0.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.1 N.D. +0.4 +0.3
growth on oleic acid YNB Glucose +0.2 -0.1 N.D. +0.5 +0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.3 +0.4 N.D. -0.3 +0.3
remove
mRNA_3450
plot
remove
mRNA_3451
plot
remove
mRNA_3452
remove
mRNA_3453
plot
remove
mRNA_3454
plot