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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11820 and 11821 are separated by 313 nucleotides
11821 and 11822 are separated by 96 nucleotides
11822 and 11823 are separated by 93 nucleotides
11823 and 11824 are separated by 242 nucleotides
mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136,126 to 138,036
11820
mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138,350 to 139,548
11821
mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934
11822
mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141,028 to 142,309
11823
mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142,552 to 143,804
11824
Group
Condition
mRNA
_3452
mRNA
_3453
mRNA
_3454
mRNA
_3455
mRNA
_3456
11820
11821
11822
11823
11824
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.0
-0.4
-0.7
auxotrophy
YNB Glucose
N.D.
-0.1
+0.0
-0.1
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
+0.5
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.1
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.9
-0.2
-0.3
+0.4
growth on ypd
YPD
N.D.
-1.4
+0.2
-0.1
+0.4
auxotrophy
Dropout Complete
N.D.
-0.3
-0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
+0.2
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
+0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.2
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.1
-0.4
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
-0.1
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
-0.3
+0.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
-0.0
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.3
+0.0
+0.5
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