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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11822 and 11823 are separated by 93 nucleotides
11823 and 11824 are separated by 242 nucleotides
11824 and 11825 are separated by 269 nucleotides
11825 and 11826 are separated by 117 nucleotides
mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139,645 to 140,934
11822
mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141,028 to 142,309
11823
mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142,552 to 143,804
11824
mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144,074 to 145,634
11825
mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635
11826
Group
Condition
mRNA
_3454
mRNA
_3455
mRNA
_3456
mRNA
_3457
mRNA
_3458
11822
11823
11824
11825
11826
auxotrophy
YNB Glucose
+0.0
-0.1
-0.9
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.6
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
-0.7
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
-0.2
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.4
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.4
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
+0.3
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.4
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.8
+0.1
N.D.
growth on ypd
YPD
+0.2
-0.1
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
+0.8
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.5
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.1
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
+0.7
+0.3
N.D.
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