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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11826 and 11827 are separated by 158 nucleotides
11827 and 11828 are separated by 156 nucleotides
11828 and 11829 are separated by 390 nucleotides
11829 and 11830 are separated by 517 nucleotides
mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635
11826
mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467
11827
mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151,624 to 153,827
11828
mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154,218 to 156,143
11829
mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156,661 to 162,747
11830
Group
Condition
mRNA
_3458
mRNA
_3459
mRNA
_3460
mRNA
_3461
mRNA
_3462
11826
11827
11828
11829
11830
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
+0.1
-0.1
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.0
-0.0
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
+0.2
-1.3
auxotrophy
Dropout Complete
N.D.
+0.1
-0.0
-0.2
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.0
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.0
+0.4
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.2
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.0
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.0
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.3
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.2
+0.5
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.0
-0.1
+0.4
auxotrophy
YNB Glucose
N.D.
+0.2
-0.1
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.1
+0.1
+0.4
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.0
+0.4
+0.1
growth on ypd
YPD
N.D.
-0.2
-0.2
-0.2
+1.4
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