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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11829 and 11830 are separated by 517 nucleotides
11830 and 11831 are separated by 749 nucleotides
11831 and 11832 are separated by 378 nucleotides
11832 and 11833 are separated by 196 nucleotides
mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154,218 to 156,143
11829
mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156,661 to 162,747
11830
mRNA_3463: 11831 - Hypothetical Protein, at 163,497 to 164,279
11831
mRNA_3464: 11832 - K02684 PRI1 DNA primase small subunit, at 164,658 to 166,622
11832
mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166,819 to 169,091
11833
Group
Condition
mRNA
_3461
mRNA
_3462
mRNA
_3463
mRNA
_3464
mRNA
_3465
11829
11830
11831
11832
11833
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-1.0
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-1.0
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.3
+0.2
N.D.
-0.1
auxotrophy
Dropout Complete
-0.2
-0.7
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.7
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
+0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-1.0
-0.1
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
-0.6
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
-0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.0
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose
-0.1
+0.4
+0.3
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.5
N.D.
+0.1
growth on ypd
YPD
-0.2
+1.4
+0.3
N.D.
-0.1
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