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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11832 and 11833 are separated by 196 nucleotides
11833 and 11834 are separated by 219 nucleotides
11834 and 11835 are separated by 2608 nucleotides
11835 and 11836 are separated by 541 nucleotides
mRNA_3464: 11832 - K02684 PRI1 DNA primase small subunit, at 164,658 to 166,622
11832
mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166,819 to 169,091
11833
mRNA_3466: 11834 - HMMPfam-Sds3-like-PF08598, at 169,311 to 170,947
11834
mRNA_3467: 11835 - KOG4503 Uncharacterized conserved membrane protein, at 173,556 to 174,836
11835
mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175,378 to 177,362
11836
Group
Condition
mRNA
_3464
mRNA
_3465
mRNA
_3466
mRNA
_3467
mRNA
_3468
11832
11833
11834
11835
11836
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.6
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.5
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.5
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.5
N.D.
+0.1
growth on ypd
YPD
N.D.
-0.1
-0.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.6
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.3
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose
N.D.
+0.1
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.3
N.D.
+0.4
auxotrophy
Dropout Complete
N.D.
-0.1
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.0
N.D.
+0.3
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