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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11834 and 11835 are separated by 2608 nucleotides
11835 and 11836 are separated by 541 nucleotides
11836 and 11837 are separated by 114 nucleotides
11837 and 11838 are separated by 219 nucleotides
mRNA_3466: 11834 - HMMPfam-Sds3-like-PF08598, at 169,311 to 170,947
11834
mRNA_3467: 11835 - KOG4503 Uncharacterized conserved membrane protein, at 173,556 to 174,836
11835
mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175,378 to 177,362
11836
mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177,477 to 179,110
11837
mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179,330 to 181,535
11838
Group
Condition
mRNA
_3466
mRNA
_3467
mRNA
_3468
mRNA
_3469
mRNA
_3470
11834
11835
11836
11837
11838
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
+0.1
-0.3
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.0
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.2
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.2
-0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
+0.2
-0.6
+0.0
growth on oleic acid
YNB Glucose
-0.5
N.D.
+0.1
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.2
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
-0.0
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.3
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.3
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
+0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.1
+0.2
+0.1
growth on ypd
YPD
-0.3
N.D.
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.1
+0.4
+0.1
auxotrophy
Dropout Complete
+0.1
N.D.
+0.4
-0.3
+0.1
auxotrophy
YNB Glucose
-0.2
N.D.
+0.4
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
-0.0
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.3
-0.0
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.4
+0.3
+0.2
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