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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11836 and 11837 are separated by 114 nucleotides
11837 and 11838 are separated by 219 nucleotides
11838 and 11839 are separated by 310 nucleotides
11839 and 11840 are separated by 528 nucleotides
mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175,378 to 177,362
11836
mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177,477 to 179,110
11837
mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179,330 to 181,535
11838
mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181,846 to 184,835
11839
mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185,364 to 186,603
11840
Group
Condition
mRNA
_3468
mRNA
_3469
mRNA
_3470
mRNA
_3471
mRNA
_3472
11836
11837
11838
11839
11840
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
-0.8
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
-0.7
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
-0.9
+0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.6
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-1.1
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.4
-0.2
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.2
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.3
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.4
-0.0
auxotrophy
Dropout Complete
+0.4
-0.3
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.2
+0.2
-0.1
growth on ypd
YPD
+0.3
+0.1
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
+0.8
-0.1
-0.2
auxotrophy
YNB Glucose
+0.4
-0.0
+0.2
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.5
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
+0.1
+0.1
+0.2
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