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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11839 and 11840 are separated by 528 nucleotides
11840 and 11841 are separated by 356 nucleotides
11841 and 11842 are separated by 356 nucleotides
11842 and 11843 are separated by 418 nucleotides
mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181,846 to 184,835
11839
mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185,364 to 186,603
11840
mRNA_3473: 11841 - K11578 ZW10, DSL1 protein transport protein DSL1/ZW10, at 186,960 to 196,280
11841
mRNA_3474: 11842 - HMMPfam-Protein of unknown function (DUF667)-PF05018, at 196,637 to 197,393
11842
mRNA_3475: 11843 - Hypothetical Protein, at 197,812 to 198,060
11843
Group
Condition
mRNA
_3471
mRNA
_3472
mRNA
_3473
mRNA
_3474
mRNA
_3475
11839
11840
11841
11842
11843
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.2
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.8
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.3
+0.1
-0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.0
+0.2
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.2
+0.6
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
+0.7
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
+0.1
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.7
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
+0.4
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+1.2
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.7
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
+1.2
-0.4
N.D.
auxotrophy
Dropout Complete
+0.1
+0.1
+0.8
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.7
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.0
+1.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
+0.3
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.2
+0.3
N.D.
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