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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11842 and 11843 are separated by 418 nucleotides
11843 and 11844 are separated by 409 nucleotides
11844 and 11845 are separated by 993 nucleotides
11845 and 11846 are separated by 394 nucleotides
mRNA_3474: 11842 - HMMPfam-Protein of unknown function (DUF667)-PF05018, at 196,637 to 197,393
11842
mRNA_3475: 11843 - Hypothetical Protein, at 197,812 to 198,060
11843
mRNA_3476: 11844 - K01915 glnA, GLUL glutamine synthetase, at 198,470 to 200,585
11844
mRNA_3477: 11845 - K07088 K07088 uncharacterized protein, at 201,579 to 204,327
11845
mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204,722 to 206,830
11846
Group
Condition
mRNA
_3474
mRNA
_3475
mRNA
_3476
mRNA
_3477
mRNA
_3478
11842
11843
11844
11845
11846
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
N.D.
-1.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
N.D.
-1.0
-0.2
growth on oleic acid
YNB Glucose
-0.6
N.D.
N.D.
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
N.D.
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
N.D.
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-0.6
+0.2
auxotrophy
YNB Glucose
-0.6
N.D.
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.5
N.D.
N.D.
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
N.D.
+0.4
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
N.D.
+0.0
+0.1
growth on ypd
YPD
+0.0
N.D.
N.D.
-0.2
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
-0.6
+1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
N.D.
N.D.
-0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
+0.7
+0.3
ypd buoyancy
40 hrs High Buoyancy
+1.0
N.D.
N.D.
+0.7
-0.2
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