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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11843 and 11844 are separated by 409 nucleotides
11844 and 11845 are separated by 993 nucleotides
11845 and 11846 are separated by 394 nucleotides
11846 and 11847 are separated by 160 nucleotides
mRNA_3475: 11843 - Hypothetical Protein, at 197,812 to 198,060
11843
mRNA_3476: 11844 - K01915 glnA, GLUL glutamine synthetase, at 198,470 to 200,585
11844
mRNA_3477: 11845 - K07088 K07088 uncharacterized protein, at 201,579 to 204,327
11845
mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204,722 to 206,830
11846
mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346
11847
Group
Condition
mRNA
_3475
mRNA
_3476
mRNA
_3477
mRNA
_3478
mRNA
_3479
11843
11844
11845
11846
11847
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.4
+0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
+1.1
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
+0.1
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.7
-0.2
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.2
+0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
+0.3
-0.1
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