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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11846 and 11847 are separated by 160 nucleotides
11847 and 11848 are separated by 196 nucleotides
11848 and 11849 are separated by 214 nucleotides
11849 and 11850 are separated by 354 nucleotides
mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204,722 to 206,830
11846
mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346
11847
mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209,543 to 211,018
11848
mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211,233 to 213,567
11849
mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213,922 to 215,101
11850
Group
Condition
mRNA
_3478
mRNA
_3479
mRNA
_3480
mRNA
_3481
mRNA
_3482
11846
11847
11848
11849
11850
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.0
N.D.
-0.3
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.0
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
N.D.
+0.0
-0.3
auxotrophy
Dropout Complete
+0.1
-0.0
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
-0.0
-0.1
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
N.D.
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
+0.2
-0.0
growth on ypd
YPD
+0.5
+0.3
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
-0.4
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
N.D.
+0.0
+0.6
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