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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11847 and 11848 are separated by 196 nucleotides
11848 and 11849 are separated by 214 nucleotides
11849 and 11850 are separated by 354 nucleotides
11850 and 11851 are separated by 117 nucleotides
mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346
11847
mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209,543 to 211,018
11848
mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211,233 to 213,567
11849
mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213,922 to 215,101
11850
mRNA_3483: 11851 - KOG0683 Glutamine synthetase, at 215,219 to 215,380
11851
Group
Condition
mRNA
_3479
mRNA
_3480
mRNA
_3481
mRNA
_3482
mRNA
_3483
11847
11848
11849
11850
11851
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.3
-0.9
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
-0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.1
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.4
-0.2
-0.3
growth on ypd
YPD
+0.3
N.D.
+0.1
-0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.1
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.0
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.1
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.0
-0.3
+0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.4
-0.1
-0.2
auxotrophy
Dropout Complete
-0.0
N.D.
-0.0
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.1
+0.2
+0.2
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.0
+0.6
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.0
+0.5
+0.1
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