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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11849 and 11850 are separated by 354 nucleotides
11850 and 11851 are separated by 117 nucleotides
11851 and 11852 are separated by 406 nucleotides
11852 and 11853 are separated by 506 nucleotides
mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211,233 to 213,567
11849
mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213,922 to 215,101
11850
mRNA_3483: 11851 - KOG0683 Glutamine synthetase, at 215,219 to 215,380
11851
mRNA_3484: 11852 - Hypothetical Protein, at 215,787 to 216,323
11852
mRNA_3485: 11853 - HMMPfam-Neugrin-PF06413, at 216,830 to 218,374
11853
Group
Condition
mRNA
_3481
mRNA
_3482
mRNA
_3483
mRNA
_3484
mRNA
_3485
11849
11850
11851
11852
11853
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.6
-1.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.9
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.5
-0.4
N.D.
auxotrophy
Dropout Complete
-0.0
+0.1
-0.1
-0.9
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
-0.7
N.D.
growth on ypd
YPD
+0.1
-0.1
-0.8
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.2
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
-0.2
-0.6
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.1
-0.2
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.5
+0.1
-0.8
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.4
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.1
-0.3
N.D.
auxotrophy
YNB Glucose
+0.2
+0.2
+0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.4
-0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.6
-0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.1
+0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.2
+1.4
N.D.
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