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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11853 and 11854 are separated by 331 nucleotides
11854 and 11855 are separated by 571 nucleotides
11855 and 11856 are separated by 484 nucleotides
11856 and 11857 are separated by 1102 nucleotides
mRNA_3485: 11853 - HMMPfam-Neugrin-PF06413, at 216,830 to 218,374
11853
mRNA_3486: 11854 - K04563 CDC28, CDC2 cyclin-dependent kinase, at 218,706 to 220,470
11854
mRNA_3487: 11855 - Hypothetical Protein, at 221,042 to 223,920
11855
mRNA_3488: 11856 - Hypothetical Protein, at 224,405 to 225,242
11856
mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373
11857
Group
Condition
mRNA
_3485
mRNA
_3486
mRNA
_3487
mRNA
_3488
mRNA
_3489
11853
11854
11855
11856
11857
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.1
-2.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
-0.3
-1.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.0
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.1
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.4
-0.5
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.6
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.1
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.3
+0.8
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
+0.5
+0.7
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