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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11855 and 11856 are separated by 484 nucleotides
11856 and 11857 are separated by 1102 nucleotides
11857 and 11858 are separated by 208 nucleotides
11858 and 11859 are separated by 594 nucleotides
mRNA_3487: 11855 - Hypothetical Protein, at 221,042 to 223,920
11855
mRNA_3488: 11856 - Hypothetical Protein, at 224,405 to 225,242
11856
mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373
11857
mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954
11858
mRNA_3491: 11859 - K03007 RPB10, POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5, at 232,549 to 233,056
11859
Group
Condition
mRNA
_3487
mRNA
_3488
mRNA
_3489
mRNA
_3490
mRNA
_3491
11855
11856
11857
11858
11859
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-2.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
-0.3
-1.7
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.0
-1.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-1.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
-0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.0
-0.8
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.6
+0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.8
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.5
+0.7
N.D.
N.D.
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