Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11856 and 11857 are separated by 1102 nucleotides
11857 and 11858 are separated by 208 nucleotides
11858 and 11859 are separated by 594 nucleotides
11859 and 11860 are separated by 212 nucleotides
mRNA_3488: 11856 - Hypothetical Protein, at 224,405 to 225,242
11856
mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373
11857
mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954
11858
mRNA_3491: 11859 - K03007 RPB10, POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5, at 232,549 to 233,056
11859
mRNA_3492: 11860 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,SUPERFAMILY--SSF53927, at 233,269 to 234,150
11860
Group
Condition
mRNA
_3488
mRNA
_3489
mRNA
_3490
mRNA
_3491
mRNA
_3492
11856
11857
11858
11859
11860
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-2.1
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose
-0.3
-1.7
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
N.D.
N.D.
-1.1
growth on oleic acid
YNB Glucose
-0.0
-1.5
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.4
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
+0.0
-0.8
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
N.D.
N.D.
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.2
N.D.
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.8
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.0
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.6
N.D.
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.7
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.8
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.2
+0.1
N.D.
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.6
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.7
N.D.
N.D.
+0.4
remove
mRNA_3488
plot
remove
mRNA_3489
plot
remove
mRNA_3490
remove
mRNA_3491
plot
remove
mRNA_3492
plot