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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11861 and 11862 are separated by 638 nucleotides
11862 and 11863 are separated by 264 nucleotides
11863 and 11864 are separated by 187 nucleotides
11864 and 11865 are separated by 249 nucleotides
mRNA_3493: 11861 - K06944 K06944 uncharacterized protein, at 234,580 to 236,697
11861
mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237,336 to 238,428
11862
mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238,693 to 239,237
11863
mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239,425 to 240,814
11864
mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241,064 to 241,942
11865
Group
Condition
mRNA
_3493
mRNA
_3494
mRNA
_3495
mRNA
_3496
mRNA
_3497
11861
11862
11863
11864
11865
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.5
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.0
N.D.
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
N.D.
+0.1
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.4
N.D.
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
N.D.
+0.2
-0.8
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
N.D.
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.3
N.D.
+0.4
+0.3
growth on oleic acid
YNB Glucose
-0.4
+0.5
N.D.
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
N.D.
+0.3
-0.2
auxotrophy
Dropout Complete
-0.6
+0.3
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose
-0.5
+0.2
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
+0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.1
N.D.
-0.2
-0.0
growth on ypd
YPD
-0.1
+0.3
N.D.
+0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.4
N.D.
+0.1
+0.6
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