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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11862 and 11863 are separated by 264 nucleotides
11863 and 11864 are separated by 187 nucleotides
11864 and 11865 are separated by 249 nucleotides
11865 and 11866 are separated by 297 nucleotides
mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237,336 to 238,428
11862
mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238,693 to 239,237
11863
mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239,425 to 240,814
11864
mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241,064 to 241,942
11865
mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242,240 to 242,927
11866
Group
Condition
mRNA
_3494
mRNA
_3495
mRNA
_3496
mRNA
_3497
mRNA
_3498
11862
11863
11864
11865
11866
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.4
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
+0.1
-0.7
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.2
-0.8
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
+0.1
-0.8
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.5
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.3
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.5
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
+0.6
+0.0
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.1
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.3
-0.2
+0.2
growth on ypd
YPD
+0.3
N.D.
+0.6
-0.2
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
+0.3
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.6
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.4
+0.3
+0.9
auxotrophy
Dropout Complete
+0.3
N.D.
+0.2
+0.3
+0.7
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