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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11865 and 11866 are separated by 297 nucleotides
11866 and 11867 are separated by 167 nucleotides
11867 and 11868 are separated by 703 nucleotides
11868 and 11869 are separated by 405 nucleotides
mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241,064 to 241,942
11865
mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242,240 to 242,927
11866
mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996
11867
mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074
11868
mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835
11869
Group
Condition
mRNA
_3497
mRNA
_3498
mRNA
_3499
mRNA
_3500
mRNA
_3501
11865
11866
11867
11868
11869
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
N.D.
-1.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.3
N.D.
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.0
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose
+0.2
+0.6
N.D.
-0.2
-1.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
N.D.
+0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
N.D.
-0.9
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.3
N.D.
+0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.5
+0.1
growth on oleic acid
YNB Glucose
-0.2
+0.3
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.0
N.D.
-1.9
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
N.D.
+0.2
+0.6
auxotrophy
Dropout Complete
+0.3
+0.7
N.D.
-0.6
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
-0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.9
N.D.
-0.2
-0.4
growth on ypd
YPD
-0.2
+0.2
N.D.
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+2.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+2.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
N.D.
+2.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
N.D.
+3.0
+0.5
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